Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) taken from Sekhon etĪl., (2011) including 60 experiments ( GEO, 06/2011).īoth compendia contain absolute expression values resulting from the microarray experiment.Were downloaded, combined, and pre-processed using a custom-made CDF file. Inbred lines, expression profiling of mutants, non-adaptive and imprinted gene expression, different tissues as well as infection with pathogenes Replicates are summarized calculating the average value Affymetrix Maize Genome Array Compendium extracted from GEO including unique 128 experiments whereas.This Zea mays CORNET version contains two public expression compedia: Can you give me some more information about the precalculated experiment sets? Make sure the cache size is big enough (50-100 MB). You can find out how to enable caching on this page. You need to make sure caching is enabled for the Java plugin. Why do I have to download Cytoscape every time I launch the Cytoscape view? You also need an up to date version of Java (see Tool question 7).Ĥ. You need to allow pop-ups in yourīrowser. To fix this problem type in " about:config" in the address bar in Firefox, hit Enter and change the value of dom.max_script_run_time to 60 or higher.Ĭalculations are done, loading is finished, but Cytoscape does not start. But that's normal, it takes a while to load some information from the database. Why does Firefox ask me to cancel the running script?įirefox thinks the script has crashed because it takes so long. To view this site use at least a 1280x1024 resolution and view it in Firefox.Ģ. That's because you're using Internet Explorer.
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